Table 2 Evaluation of the clusters identified by MiMeSR using Gene Ontology data
From: Extracting biologically significant patterns from short time series gene expression data
MiMeSR (MMSR) | ||||
|---|---|---|---|---|
Clusters | No. of genes | Top GO term | # of genes in category | p -value |
A2 | 246 | Ribosome biogenesis and assembly | 103 (42.0%) | 2.0e-64 |
| Â | Â | Gene expression | 167 (68.0%) | 1.0e-49 |
B2* | 66 | Sulfur metabolic process | 13 (20.0%) | 1.2e-12 |
| Â | Â | Sulfur amino acid metabolic process | 8 (12.1%) | 4.4e-08 |
C2 | 133 | Ribosome biogenesis and assembly | 82 (62.0%) | 1.7e-68 |
| Â | Â | Ribonucleoprotein complex biogenesis and assembly | 84 (63.2%) | 5.6e-65 |
D2 | 80 | Translation | 62 (77.5%) | 1.5e-46 |
| Â | Â | Macromolecule biosynthetic process | 66 (82.5%) | 1.9e-45 |
E2 | 109 | Ribosome biogenesis and assembly | 73 (67.0%) | 1.7e-64 |
| Â | Â | Ribonucleoprotein complex biogenesis and assembly | 73 (67.0%) | 8.1e-59 |
F2 | 60 | Ribosome biogenesis and assembly | 42 (70.0%) | 1.6e-37 |
| Â | Â | Ribonucleoprotein complex biogenesis and assembly | 42 (70.0%) | 2.2e-34 |
G2 | 94 | Translation | 76 (81.0%) | 3.1e-60 |
| Â | Â | Macromolecule biosynthetic process | 77 (82.0%) | 5.2e-53 |