Skip to main content

Table 4 Evaluation of the clusters identified by MiMeSR using ChIP-chip data.

From: Extracting biologically significant patterns from short time series gene expression data

 

MiMeSR (MMSR)

TFs

A2

B2

C2

D2

E2

F2

G2

ARO80

  

4/3%

(3e-02)

    

BAS1

       

CBF1

10/4%

(1e-02)

9/14%

(3e-03)

  

3/3%

(1e-02)

  

CHA4

       

DAL81

       

FHL1

86/35%

(3e-20)

 

27/20%

(7e-14)

48/60%

(1e-52)

5/5%

(1e-02)

3/5%

(7e-02)

62/65%

(2e-70)

GCR2

   

4/5%

(5e-03)

   

GCN4

       

MET31

       

MET32

 

4/5%

(9e-03)

 

3/3%

(9e-02)

   

MET4

       

SFP1

30/12%

(1e-08)

 

4/3%

(1e-02)

17/21%

(1e-21)

  

19/20%

(1e-20)

  1. Bold letter boxes correspond to statistically overrepresented transcription factors in that cluster. Each box contains: (a) the number of genes, (b) the percent of genes in the cluster associated with this transcription factor, and (c) the p-value (Fisher's exact test).
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us