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Figure 3 | BMC Bioinformatics

Figure 3

From: The B6 database: a tool for the description and classification of vitamin B6-dependent enzymatic activities and of the corresponding protein families

Figure 3

Homology network of PLP-dependent enzymes. Nodes represent Hidden Markov models (HMMs) of PLP-dependent families. Edges represent homology connections (E < 10-5) between families established by HMM-HMM comparisons [18]. Black edges connect protein families with the most significant similarities (E < 10-50). The network is visualized with the "Degree sorted circle layout" of Cytoscape [19]. Colors were mapped into nodes using the structural group of the protein family as a node property.

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BMC Bioinformatics

ISSN: 1471-2105

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