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Table 1 Cross-validation performance comparison of different MultiLoc architectures trained using the BaCelLo and the Höglund datasets

From: MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction

Dataset

Method

Animals

Fungi

Plants

  

AVG

ACC

AVG

ACC

AVG

ACC

BaCelLo

       
 

MultiLoc

77.3 (± 2.9)

75.7 (± 3.1)

78.4 (± 2.7)

71.0 (± 2.6)

71.4 (± 6.8)

67.8 (± 3.8)

 

+ PhyloLoc

80.1 (± 2.4)

78.2 (± 2.9)

80.0 (± 2.5)

73.6 (± 0.9)

78.6 (± 3.6)

77.4 (± 1.9)

 

+ GOLoc

84.0 (± 1.7)

82.8 (± 2.0)

81.1 (± 0.5)

75.5 (± 1.1)

80.9 (± 4.4)

77.6 (± 3.5)

 

MultiLoc2-LowRes

86.1 (± 1.4)

84.0 (± 1.7)

82.8 (± 2.2)

77.9 (± 0.5)

81.9 (± 4.1)

80.2 (± 3.5)

Höglund

       
 

MultiLoc

78.6 (± 1.2)

76.4 (± 1.2)

78.0 (± 1.3)

76.6 (± 1.2)

78.0 (± 1.8)

76.4 (± 1.7)

 

+ PhyloLoc

84.6 (± 0.7)

84.0 (± 0.6)

84.7 (± 1.4)

84.4 (± 0.9)

86.5 (± 1.5)

84.3 (± 0.7)

 

+ GOLoc

87.3 (± 1.8)

86.7 (± 1.0)

87.1 (± 0.9)

86.9 (± 0.8)

86.9 (± 1.4)

86.3 (± 1.1)

 

MultiLoc2-HighRes

89.3 (± 1.4)

88.6 (± 1.0)

89.2 (± 1.1)

88.9 (± 1.2)

89.4 (± 0.8)

88.7 (± 0.9)

  1. This table compares the average sensitivities (AVGs) and overall accuracies (ACCs) of MultiLoc2-LowRes and MultiLoc2-HighRes with those of the original MultiLoc and the extended architecture based on PhyloLoc as well as GOLoc only. The AVGs and ACCs are given in percent. The standard deviations (in parentheses) refer to the differences of the AVGs and ACCs of the different cross-validation models.