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Table 4 Performance comparison of MultiLoc2-HighRes with WoLF PSORT using Höglund independent dataset (Höglund IDS)

From: MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction

  

Animals

Fungi

Plants

Predictor

Loc

No.

SE

SE3

No.

SE

SE3

No.

SE

SE3

MultiLoc2-HighRes

ex

78

78

91

7

77

86

1

0

100

 

pm

34

55

78

29

10

31

6

33

50

 

pe

3

33

100

5

20

100

2

50

100

 

er

25

28

70

46

46

83

6

50

83

 

go

14

7

57

8

25

63

6

33

50

 

ly

4

25

75

-

-

-

-

-

-

 

va

-

-

-

11

0

0

9

11

33

 

AVG

 

38

79

 

30

61

 

30

69

 

ACC

 

57

82

 

31

59

 

30

57

WoLF PSORT

ex

78

93

97

7

36

79

1

0

0

 

pm

34

41

59

29

59

79

6

83

83

 

pe

3

0

0

5

0

0

2

0

0

 

er

25

8

40

46

9

54

6

0

50

 

go

14

0

7

8

0

0

6

17

17

 

ly

4

0

25

-

-

-

-

-

-

 

va

-

-

-

11

0

0

9

0

33

 

AVG

 

24

38

 

17

35

 

17

31

 

ACC

 

58

68

 

22

51

 

20

40

  1. The sensitivity (SE) and top three sensitivity (SE3) for each localization are shown. SE3 measures the fraction of correctly predicted proteins within the top three ranked localizations. The corresponding average sensitivity and overall accuracy are listed also, with the top-scoring highlighted in bold. Values based on very few proteins (less than six) are drawn in gray. All measures are given as percentages.