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Table 4 Performance comparison of MultiLoc2-HighRes with WoLF PSORT using Höglund independent dataset (Höglund IDS)

From: MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction

   Animals Fungi Plants
Predictor Loc No. SE SE3 No. SE SE3 No. SE SE3
MultiLoc2-HighRes ex 78 78 91 7 77 86 1 0 100
  pm 34 55 78 29 10 31 6 33 50
  pe 3 33 100 5 20 100 2 50 100
  er 25 28 70 46 46 83 6 50 83
  go 14 7 57 8 25 63 6 33 50
  ly 4 25 75 - - - - - -
  va - - - 11 0 0 9 11 33
  AVG   38 79   30 61   30 69
  ACC   57 82   31 59   30 57
WoLF PSORT ex 78 93 97 7 36 79 1 0 0
  pm 34 41 59 29 59 79 6 83 83
  pe 3 0 0 5 0 0 2 0 0
  er 25 8 40 46 9 54 6 0 50
  go 14 0 7 8 0 0 6 17 17
  ly 4 0 25 - - - - - -
  va - - - 11 0 0 9 0 33
  AVG   24 38   17 35   17 31
  ACC   58 68   22 51   20 40
  1. The sensitivity (SE) and top three sensitivity (SE3) for each localization are shown. SE3 measures the fraction of correctly predicted proteins within the top three ranked localizations. The corresponding average sensitivity and overall accuracy are listed also, with the top-scoring highlighted in bold. Values based on very few proteins (less than six) are drawn in gray. All measures are given as percentages.