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Table 6 Deregulation of the five oncogenes as measured by the three methods.

From: Comparative study of gene set enrichment methods

   RS GLAPA GSEA
Pathway Size Rank P-value Rank P-value1 P-value2 Rank P-value
Myc_up 119 60 0.083 997 0.005 0.831 7 0.000
Myc_down 129 1099 0.629 242 0.006 0.199 6 0.000
Ras_up 195 1181 0.726 842 0.007 0.998 6 0.019
Ras_down 153 439 0.442 1216 0.004 0.991 5 0.006
E2F3_up 138 35 0.088 79 0.012 0.472 4 0.000
E2F3_down 160 994 0.619 1111 0.016 0.965 10 0.008
Src_up 28 182 0.186 1409 0.018 0.513 17 0.060
Src_down 45 41 0.104 781 0.019 0.303 9 0.032
β-catenin_up 43 231 0.198 1588 0.063 0.952 4 0.006
β-catenin_down 55 87 0.105 495 0.016 0.211 6 0.011