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Table 6 Deregulation of the five oncogenes as measured by the three methods.

From: Comparative study of gene set enrichment methods

  

RS

GLAPA

GSEA

Pathway

Size

Rank

P-value

Rank

P-value1

P-value2

Rank

P-value

Myc_up

119

60

0.083

997

0.005

0.831

7

0.000

Myc_down

129

1099

0.629

242

0.006

0.199

6

0.000

Ras_up

195

1181

0.726

842

0.007

0.998

6

0.019

Ras_down

153

439

0.442

1216

0.004

0.991

5

0.006

E2F3_up

138

35

0.088

79

0.012

0.472

4

0.000

E2F3_down

160

994

0.619

1111

0.016

0.965

10

0.008

Src_up

28

182

0.186

1409

0.018

0.513

17

0.060

Src_down

45

41

0.104

781

0.019

0.303

9

0.032

β-catenin_up

43

231

0.198

1588

0.063

0.952

4

0.006

β-catenin_down

55

87

0.105

495

0.016

0.211

6

0.011