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Table 2 Comparison of five network features for the dK distribution models with that of the GDS1013 coexpression network with PCC cut-off threshold of 0.89, d = 1, 2, 3.

From: Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach

Metric

λ 1

λ n-1

d

σ d

r

Coexp

0.09

1.91

3.27

1.31

0.5

1k

0.31(0.068)

1.69(0.068)

2.61(0.0053)

0.67

-0.05(0.0052)

2k

0.12(0.038)

1.88(0.038)

2.78(0.0013)

0.83

0.20(0.0037)

3k

0.19(0.059)

1.81(0.059)

2.69(0.0074)

0.74

0.12(0.0042)

  1. Notations are the same as in Table 1.
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BMC Bioinformatics

ISSN: 1471-2105

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