Table 1 Identifiers automatically recognized by the system
From: Genephony: a knowledge management tool for genome-wide research
Object | Source | Examples |
|---|---|---|
Genomic regions | UCSC Genome Browser (hg18) | chr3:120,000,000-150,000,000 |
Cytogenetic bands | UCSC Genome Browser (hg18) | chr3:q13.11, chr3:q13 |
dbSNP identifiers | dbSNP (build 130) | rs36126692 |
Entrez GeneID identifiers | NCBI | 3456 |
HGNC gene symbols | NCBI | IFNB1 |
Genbank mRNA accession numbers | NCBI | NM_002176 |
SWISSPROT protein identifiers | SWISSPROT | P01574 |
ENSEMBL gene identifiers | EBI | ENSG00000171855 |
GeneOntology classes | GO | GO:0051990 |
OMIM entries | NCBI | MIM:178600, MIM:hypertension |
STS markers | UCSC Genome Browser (hg18) | AFM344WE9, GDB:199719 |
MicroRNA identifiers | Sanger | hsa-mir-942 |
MicroRNA accession numbers | Sanger | MI0005767 |
Microarray probesets | Affymetrix, Illumina | 208173_at |
SNP microarray probesets | Affymetrix | SNP_A-1507458 |
CNVs | Affymetrix | Variation_0008 |
GAD entries | GAD | GAD:retinopathy |