Figure 11

Median ANOVA (1-p), Median Signed ANOVA (1-p), RMA, PLM ROC curves for the Golden Spike experiment. This chart shows the Golden Spike ROC curves, where probe sets that were either "equal" or "empty" (in the terminology of Choe [4]) under both Control and Spiked-in conditions were considered to be false positives, while those with increased concentrations in the Spiked-in chips were taken to be true positives Median ANOVA (1-p)'s, median signed ANOVA (1-p)'s and affylmGUI's RMA and Probe Level Modeling (PLM) are shown in red, black, green and cyan respectively.