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Table 1 Genomic sequences included on the Listeria monocytogenes pan-genome tiling array.

From: Efficient oligonucleotide probe selection for pan-genomic tiling arrays

Strain Lineage Serotype Bases Contigs Genes* EGD-e %Idy
EGD-e II 1/2a 2,944,528 1 3,002 100
LO28 II 1/2c 2,910,810 529 5,078 99.3
FSL F2-515 II 1/2a 2,586,267 1,415 NA 98.41
FSL J2-003 II 1/2a 2,878,206 406 4,686 98.22
1/2a F6854 II 1/2a 2,950,285 133 3,028 98.01
FSL N3-165 II 1/2a 2,886,689 33 2,963 97.52
J2818 II 1/2a 2,971,223 38 3,270 97.19
F6900 II 1/2a 2,958,319 35 3,333 97.15
J0161 II 1/2a 3,051,828 51 3,252 97.09
10403S II 1/2a 2,866,709 32 2,944 96.9
FSL J2-064 I 1/2b 2,899,431 327 3,914 94.69
4b H7858 I 4b 2,972,254 181 3,187 94.54
FSL J1-175 I 1/2b 2,902,346 357 4,559 94.49
FSL N1-017 I 4b 2,857,865 77 3,465 94.3
HPB2262 I 4b 3,006,068 75 3,319 94.01
FSL J1-194 I 1/2b 2,986,227 44 3,792 93.98
4b F2365 I 4b 2,905,187 1 2,987 93.87
FSL R2-503 I 1/2b 3,001,696 54 4,863 93.73
FSL J2-071 IIIA 4c 3,149,923 46 3,789 93.28
FSL J1-208 IIIB 4a 2,260,760 1,494 NA 92.84
  1. Sequences and annotations were obtained from NMPDR. The final column shows the nucleotide identity of a whole-genome alignment versus strain EGD-e. *Number of annotated protein coding genes and RNAs reported by NMPDR at the time of this study.