Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum

Table 2 Sub-cellular localisation predictions using SignalP of proteins over-represented within the Mascot peptide supported gene annotations of S. nodorum.¹

	Peptide supported genes (all)	Peptide supported genes (v1)	Peptide supported genes (v2)	Unsupported genes	Expected genes	Total Genes
non-secretory protein	1847	163	1684	11259	1773	13106
signal anchor OR signal peptide	287	25	262	2723	436	3010
TOTAL	2134	188	1946	13982	2209	16116

¹Numbers of peptide supported genes in each category were compared to expected counts from a random sampling of the whole genome via Fisher's exact test at a significance threshold of <0.05.

ISSN: 1471-2105