Figure 5
From: Strategies for analyzing highly enriched IP-chip datasets
Location Normalization. (A) WT probes (after within-array normalization) plotted in the MA plane. The location parameter is the median M-value of 
. (B) rpd 3Δ probes (after within-array normalization) plotted in the MA plane. (C) WT and rpd 3Δ probes plotted in the chromosomal plane (chromosome XIII). (D) WT probes plotted in the MA plane after location normalization. (E) rpd 3Δ probes plotted in the MA plane after location normalization. (F) WT and rpd 3Δ probes plotted in the chromosomal plane (chromosome XIII) after location normalization.