Challenges for automatically extracting molecular interactions from full-text articles

BMC Bioinformatics

Table 8 Sentence retrieval performance.

Query set	No. retrieved	P	R	F	TP	FP	FN
bio-ent + verb + auxiliary	1769	34.0	34.6	34.3	601	1168	1135
bio-ent + verb	2287	28.3	37.3	32.2	647	1640	1089
bio-ent + verb syn + auxiliary	3277	33.2	62.7	43.4	1089	2188	647
bio-ent + verb syn	4507	25.8	67.1	37.3	1165	3342	571
bio-ent + any verb	8856	14.4	73.4	24.1	1274	7582	462
bio-ent	10232	12.7	74.9	21.7	1300	8932	436

Effectiveness of query sets on sentence retrieval performance. For each query set, we identified the number of sentences retrieved, and the precision, recall, and F-score. The number of true and false positives, and false negatives are also shown.

ISSN: 1471-2105