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Table 1 TM topology predictors

From: MetaTM - a consensus method for transmembrane protein topology prediction

Method

Version

TM pred.

SP pred.

Homology

TopPred

1.0

Yes

No

No

PHDhtm

2.1

Yes

No

Yes

HMMTOP

2.1

Yes

No

Yes

TMHMM

2.0

Yes

No

No

PolyPhobius

1.0

Yes

Yes

Yes

Memsat

3.0

Yes

Yes

Yes

SignalP

3.0

No

Yes

No

  1. Features of the six TM topology predictors incorporated in MetaTM, plus the SP-only predictor SignalP.