Unsupervised statistical clustering of environmental shotgun sequences

BMC Bioinformatics

Table 2 Summary of species' characteristics, including all independent monomer and dimer frequencies, in the subset of trials on 5 pairs of genomes performed in Figures 5 and 6.

Species composition	GC content	p _A	p _AA	p _AC	p _AT	p _CA	p _CG	p _GC
Arthrobacter aurescens TC1	63%	0.186	0.041	0.044	0.048	0.054	0.127	0.114
Sinorhizobium meliloti 1021	62%	0.189	0.040	0.057	0.037	0.068	0.097	0.098
Lactococcus lactis subsp. cremoris MG1363	36%	0.322	0.128	0.046	0.092	0.063	0.025	0.037
Francisella tularensis subsp. holarctica FTA	32%	0.337	0.118	0.047	0.109	0.059	0.015	0.038
Helicobacter pylori HPAG1	40%	0.301	0.105	0.050	0.082	0.066	0.027	0.042
Streptococcus pneumoniae R6	39%	0.303	0.126	0.040	0.079	0.058	0.037	0.060
Staphylococcus aureus RF122	35%	0.324	0.122	0.042	0.097	0.060	0.017	0.037
Prochlorococcus marinus str. NATL2A	33%	0.333	0.121	0.053	0.110	0.066	0.026	0.035
Staphylococcus aureus subsp. aureus COL	31%	0.343	0.134	0.038	0.110	0.055	0.008	0.027
Methanocaldococcus jannaschii DSM 2661	33%	0.335	0.122	0.053	0.112	0.065	0.026	0.033

ISSN: 1471-2105