Table 2 Top scoring GO classes from one of the positive datasets
From: Generation of Gene Ontology benchmark datasets with various types of positive signal
Correlation with signal classes | |||||||
|---|---|---|---|---|---|---|---|
cl. Num. | log10(p) | Class names | 13 | 12 | 9 | 5 | 6 |
1 | 5.152 | metal ion transporter activity | -0.005 | -0.0078 | -0.0068 | -0.0067 | 0.9068 |
2 | 4.8916 | carboxylic acid transport | 0.0266 | -0.0088 | -0.0076 | 0.8561 | 0.0165 |
3 | 4.7933 | organic acid transport | 0.0262 | -0.0089 | -0.0077 | 0.8475 | 0.0162 |
4 | 4.6381 | tRNA ligase activity | -0.0048 | -0.0075 | 0.9863 | -0.0064 | -0.0064 |
5 | 4.6381 | amino acid transport | -0.0048 | -0.0075 | -0.0065 | 1 | -0.0064 |
6 | 4.6381 | di-, tri-valent inorganic cation transporter activity | -0.0048 | -0.0075 | -0.0065 | -0.0064 | 1 |
7 | 4.6381 | ligase activity, forming carbon-oxygen bonds | -0.0048 | -0.0075 | 0.9863 | -0.0064 | -0.0064 |
8 | 4.6381 | ligase activity, formingaminoacyl-tRNA and relatedcompounds | -0.0048 | -0.0075 | 0.9863 | -0.0064 | -0.0064 |
9 | 4.5219 | RNA ligase activity | -0.0048 | -0.0076 | 1 | -0.0065 | -0.0065 |
10 | 4.2093 | carboxylic acid transporter activity | 0.0269 | -0.0087 | -0.0075 | 0.7439 | 0.0168 |
11 | 4.1976 | ligase activity, forming phosphoric ester bonds | -0.005 | -0.0079 | 0.9615 | -0.0068 | -0.0068 |
12 | 4.1196 | bud tip | -0.0056 | 1 | -0.0076 | -0.0075 | -0.0075 |
13 | 4.0201 | response to inorganic substance | 1 | -0.0056 | -0.0048 | -0.0048 | -0.0048 |
14 | 3.9477 | organic acid transporter activity | 0.0258 | -0.0089 | -0.0078 | 0.7214 | 0.0159 |
15 | 3.8469 | transition metal ion transporter activity | -0.0042 | -0.0066 | -0.0057 | -0.0057 | 0.8813 |
16 | 3.7791 | iron ion transporter activity | -0.0025 | -0.0039 | -0.0034 | -0.0034 | 0.5258 |
17 | 3.6126 | tRNA aminoacylation for protein translation | -0.0044 | -0.0068 | 0.8395 | -0.0059 | -0.0059 |
18 | 3.6126 | amino acid activation | -0.0044 | -0.0068 | 0.8395 | -0.0059 | -0.0059 |
19 | 3.6126 | tRNA aminoacylation | -0.0044 | -0.0068 | 0.8395 | -0.0059 | -0.0059 |
20 | 3.5079 | ion transporter activity | -0.0092 | -0.0144 | -0.0125 | -0.0123 | 0.5218 |
21 | 3.4751 | amine transport | -0.0055 | 0.0121 | -0.0075 | 0.8651 | -0.0074 |
22 | 3.3985 | amino acid transporter activity | -0.0045 | -0.0071 | -0.0061 | 0.9128 | -0.0061 |
23 | 3.2561 | cation transporter activity | -0.0085 | -0.0134 | -0.0116 | -0.0115 | 0.5605 |
24 | 3.246 | di-, tri-valent inorganic cation transport | 0.0258 | -0.0089 | -0.0078 | 0.0159 | 0.7685 |
25 | 3.1866 | transporter activity | -0.0055 | -0.0192 | -0.023 | 0.2493 | 0.2833 |
26 | 3.1644 | transition metal ion transport | 0.0291 | -0.0082 | -0.0071 | 0.0186 | 0.6841 |
27 | 3.0334 | basic amino acid transporter activity | -0.0022 | -0.0035 | -0.0031 | 0.4702 | -0.003 |
28 | 2.9412 | siderophore-iron transporter activity | -0.0016 | -0.0025 | -0.0022 | -0.0021 | 0.3324 |
29 | 2.9412 | siderophore transporter activity | -0.0016 | -0.0025 | -0.0022 | -0.0021 | 0.3324 |
30 | 2.9035 | metal ion transport | 0.0241 | -0.0094 | -0.0081 | 0.0144 | 0.733 |