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Table 1 Complete resource information stored in the knowledge base

From: BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature

RESOURCE

Name:

GenePublisher http://www.cbs.dtu.dk/services/GenePublisher

  

FUNCTIONALITIES

Functionality 1: analysis of DNA microarray data

Category:

analysis

Domain:

DNA

Category:

analysis

Domain:

Microarray

Input:

 

Output:

dna microarray data

PAPERS

Paper 1: GenePublisher: automated analysis of DNA microarray data.

Authors:

Knudsen, S; Workman, C; Sicheritz-Ponten, T; Friis, C

Abstract:

GenePublisher, a system for automatic analysis of data from DNA microarray experiments, has been implemented with a web interface at http://www.cbs.dtu.dk/services/GenePublisher. Raw data are uploaded to the server together with a specification of the data. The server performs normalization, statistical analysis and visualization of the data. The results are run against databases of signal transduction pathways, metabolic pathways and promoter sequences in order to extract more information. The results of the entire analysis are summarized in report form and returned to the user.

PMID:

12824347

ISIID:

000183832900039

  1. The table shows an example of all the information about resources in the BIRI Knowledge Base. For each resource, the system stores the information that it has extracted from the literature. Additional links, if any, are provided to the resource's official web page and to the PubMed® website.