From: Discovering multiple realistic TFBS motifs based on a generalized model
Sequences S | SIM A | TFBSs R | PFM Θ (4 × w(= 7)) |
---|---|---|---|
S1: acgtCGATTGCctaag | 0000100000000000 | CGATTGC | Â |
S2: taTGATCGAtgacgca | 0010000000000000 | TGATCGA | A: 0.0 0.2 0.6 0.1 0.1 0.0 0.7 |
S3: cgaCAATTGAgcttac | 0001000000000000 | CAATTGA | C: 0.8 0.0 0.2 0.3 0.3 0.2 0.3 |
S4: gCGCTCGAcaagctgt | 0100000000000000 | CGCTCGA | G: 0.0 0.8 0.0 0.0 0.0 0.8 0.0 |
S5: cgttTGTCACAgtcta | 0000100000000000 | TGTCACA | T: 0.2 0.0 0.2 0.6 0.6 0.0 0.0 |
S6: tcagcCACACCCagct | 0000010000000000 | CACACCC | Â |
S7: ccagagCGTCTGAttg | 0000001000000000 | CGTCTGA | Background: Θ0: |
S8: gacttcaCGACTGAgc | 0000000100000000 | CGACTGA | θ0A= 0.24 θ0C= 0.29 |
S9: gctgcccatCGATTGA | 0000000001000000 | CGATTGA | θ0G= 0.24 θ0T= 0.23 |
S10: ccaggtacCGATTGCa | 0000000010000000 | CGATTGC | Â |