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Table 3 Synthetic experiments.

From: Discovering multiple realistic TFBS motifs based on a generalized model

Scenarios GALF-G GALF-P GAME MEME BioPro.
Width/Num/Con      
Short/Small/Low 0.48 ± 0.29 0.44 ± 0.27 0.30 ± 0.30 0.39 ± 0.35 0.39 ± 0.31
Short/Large/Low 0.55 ± 0.22 0.55 ± 0.22 0.36 ± 0.30 0.42 ± 0.29 0.45 ± 0.23
Long/Small/Low 0.89 ± 0.13 0.89 ± 0.14 0.82 ± 0.22 0.88 ± 0.14 0.83 ± 0.14
Long/Large/Low 0.91 ± 0.06 0.91 ± 0.05 0.90 ± 0.07 0.90 ± 0.07 0.80 ± 0.11
Short/Small/High 0.84 ± 0.07 0.80 ± 0.09 0.75 ± 0.23 0.85 ± 0.07 0.78 ± 0.12
Short/Large/High 0.85 ± 0.04 0.83 ± 0.05 0.83 ± 0.10 0.83 ± 0.04 0.76 ± 0.06
Long/Small/High 0.98 ± 0.02 0.98 ± 0.03 0.97 ± 0.03 0.98 ± 0.02 0.97 ± 0.03
Long/Large/High 0.99 ± 0.01 0.97 ± 0.02 0.98 ± 0.01 0.98 ± 0.01 0.96 ± 0.02
Average 0.81 0.80 0.74 0.78 0.74
  1. Average site level F-scores for the 800 fixed-width synthetic datasets experiments. ± indicates the standard deviation (over the 100 datasets generated for each scenario). Width: the motif width, Num: the number of sequences and Con: conservation degree.