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Table 3 Synthetic experiments.

From: Discovering multiple realistic TFBS motifs based on a generalized model

Scenarios

GALF-G

GALF-P

GAME

MEME

BioPro.

Width/Num/Con

     

Short/Small/Low

0.48 ± 0.29

0.44 ± 0.27

0.30 ± 0.30

0.39 ± 0.35

0.39 ± 0.31

Short/Large/Low

0.55 ± 0.22

0.55 ± 0.22

0.36 ± 0.30

0.42 ± 0.29

0.45 ± 0.23

Long/Small/Low

0.89 ± 0.13

0.89 ± 0.14

0.82 ± 0.22

0.88 ± 0.14

0.83 ± 0.14

Long/Large/Low

0.91 ± 0.06

0.91 ± 0.05

0.90 ± 0.07

0.90 ± 0.07

0.80 ± 0.11

Short/Small/High

0.84 ± 0.07

0.80 ± 0.09

0.75 ± 0.23

0.85 ± 0.07

0.78 ± 0.12

Short/Large/High

0.85 ± 0.04

0.83 ± 0.05

0.83 ± 0.10

0.83 ± 0.04

0.76 ± 0.06

Long/Small/High

0.98 ± 0.02

0.98 ± 0.03

0.97 ± 0.03

0.98 ± 0.02

0.97 ± 0.03

Long/Large/High

0.99 ± 0.01

0.97 ± 0.02

0.98 ± 0.01

0.98 ± 0.01

0.96 ± 0.02

Average

0.81

0.80

0.74

0.78

0.74

  1. Average site level F-scores for the 800 fixed-width synthetic datasets experiments. ± indicates the standard deviation (over the 100 datasets generated for each scenario). Width: the motif width, Num: the number of sequences and Con: conservation degree.