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Table 5 Experiments on the 8 real datasets (1).

From: Discovering multiple realistic TFBS motifs based on a generalized model

Datasets GALF-G GAME
  sPPV sSn sF sPPV sSn sF
CREB       
R 1 0.76 ± 0.00 0.68 ± 0.00 0.72 ± 0.00 0.34 ± 0.37 0.35 ± 0.36 0.34 ± 0.36
R 2 0.75 ± 0.06 0.68 ± 0.04 0.71 ± 0.05 0.33 ± 0.34 0.34 ± 0.35 0.33 ± 0.34
R 3 0.76 ± 0.00 0.68 ± 0.00 0.72 ± 0.00 0.39 ± 0.36 0.38 ± 0.35 0.38 ± 0.35
CRP       
R 1 0.94 ± 0.00 0.73 ± 0.02 0.82 ± 0.01 0.79 ± 0.02 0.78 ± 0.00 0.78 ± 0.01
R 2 0.89 ± 0.02 0.74 ± 0.00 0.81 ± 0.01 0.82 ± 0.00 0.78 ± 0.00 0.80 ± 0.00
R 3 0.79 ± 0.06 0.71 ± 0.04 0.75 ± 0.05 0.93 ± 0.03 0.66 ± 0.03 0.77 ± 0.01
ERE       
R 1 0.64 ± 0.02 0.83 ± 0.02 0.72 ± 0.02 0.53 ± 0.00 0.80 ± 0.00 0.63 ± 0.00
R 2 0.67 ± 0.03 0.85 ± 0.03 0.75 ± 0.03 0.55 ± 0.04 0.79 ± 0.02 0.65 ± 0.02
R 3 0.77 ± 0.05 0.84 ± 0.01 0.80 ± 0.03 0.60 ± 0.04 0.80 ± 0.03 0.69 ± 0.03
E2F       
R 1 0.79 ± 0.02 0.84 ± 0.03 0.81 ± 0.02 0.76 ± 0.09 0.84 ± 0.10 0.80 ± 0.10
R 2 0.79 ± 0.00 0.81 ± 0.00 0.80 ± 0.00 0.72 ± 0.00 0.85 ± 0.00 0.78 ± 0.00
R 3 0.79 ± 0.00 0.81 ± 0.00 0.80 ± 0.00 0.75 ± 0.00 0.78 ± 0.00 0.76 ± 0.00
MEF2       
R 1 0.93 ± 0.00 0.82 ± 0.00 0.88 ± 0.00 0.65 ± 0.29 0.75 ± 0.33 0.69 ± 0.30
R 2 0.94 ± 0.00 1.00 ± 0.00 0.97 ± 0.00 0.73 ± 0.26 0.77 ± 0.28 0.75 ± 0.27
R 3 1.00 ± 0.00 1.00 ± 0.00 1.00 ± 0.00 0.93 ± 0.00 0.83 ± 0.03 0.88 ± 0.01
MyoD       
R 1 0.33 ± 0.04 0.42 ± 0.05 0.37 ± 0.04 0.13 ± 0.10 0.16 ± 0.10 0.14 ± 0.10
R 2 0.21 ± 0.01 0.23 ± 0.02 0.21 ± 0.05 0.12 ± 0.11 0.16 ± 0.16 0.11 ± 0.11
R 3 0.25 ± 0.00 0.29 ± 0.00 0.25 ± 0.06 0.13 ± 0.12 0.14 ± 0.15 0.13 ± 0.14
SRF       
R 1 0.72 ± 0.04 0.87 ± 0.03 0.79 ± 0.03 0.71 ± 0.02 0.87 ± 0.04 0.78 ± 0.03
R 2 0.74 ± 0.03 0.78 ± 0.04 0.76 ± 0.03 0.66 ± 0.02 0.87 ± 0.01 0.75 ± 0.02
R 3 0.70 ± 0.02 0.74 ± 0.08 0.72 ± 0.05 0.70 ± 0.06 0.77 ± 0.05 0.73 ± 0.02
TBP       
R 1 0.86 ± 0.01 0.82 ± 0.02 0.84 ± 0.01 0.80 ± 0.08 0.75 ± 0.12 0.77 ± 0.09
R 2 0.87 ± 0.02 0.86 ± 0.02 0.87 ± 0.01 0.79 ± 0.05 0.78 ± 0.04 0.78 ± 0.03
R 3 0.87 ± 0.02 0.86 ± 0.02 0.86 ± 0.02 0.71 ± 0.17 0.74 ± 0.18 0.72 ± 0.18
Average 0.74 0.75 0.74 0.61 0.66 0.62
  1. Average results (precision (sPPV), recall (sSn) and F-scores (sF) are averaged separately) of GALF-G and GAME on the 8 datasets. Each range R i = [w + (i - 1) - 3, w + (i - 1) + 3] in general indicates different shifts i from the true width w. ± shows the standard deviation (based on 20 independent runs of each dataset with each range). The results with best sF among this table and Table 6 are shown in bold.