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Table 8 Experimental results on the E. coli benchmark.

From: Discovering multiple realistic TFBS motifs based on a generalized model

Algorithms

Nucleotide level (n)

Binding site level (s)

 

nPC

nSn

nPPV

nF

sPC

sSn

sPPV

sF

GALF-G (15)

0.260

0.290

0.309

0.300

0.386

0.538

0.520

0.529

GALF-G (rg)

0.254

0.297

0.304

0.301

0.379

0.620

0.502

0.555

AlignACE

0.128

0.198

0.152

0.172

0.234

0.355

0.335

0.345

BioProspector

0.174

0.205

0.270

0.233

0.294

0.424

0.374

0.397

MDScan

0.149

0.177

0.230

0.200

0.240

0.328

0.355

0.341

MEME

0.158

0.259

0.199

0.225

0.295

0.461

0.436

0.448

MotifSampler

0.153

0.179

0.237

0.204

0.302

0.331

0.476

0.390

Weeder

0.152

0.162

0.204

0.181

0.307

0.543

0.387

0.452

  1. Prediction accuracy on the ECRDB62A benchmark of E. Coli at nucleotide, binding site levels. GALF-G (15) was run with the fixed width 15 and GALF-G (rg) was run with the range [10,20]. The best results are bold.
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BMC Bioinformatics

ISSN: 1471-2105

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