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Table 5 Binding site detection by grammars obtained for PS00307 pattern.

From: A stochastic context free grammar based framework for analysis of protein sequences

 

Detection (Exact)

Detection (50% coverage)

Accessibility

0.76

0.99

Ca

0.45

0.85

Mn

0.37

0.88

Combination

0.75

1.00

  1. Detection (Exact): the peak is expected to be exactly at the position of the pattern; Detection (50% coverage): the peak is expected to be no longer distance than 50% of the pattern length (here: 10)