From: Riboswitch Detection Using Profile Hidden Markov Models
Family | Total hits(CM) | Total hits(pHMM) | Common hits | % of CM hits covered by pHMM I# | % of CM hits covered by pHMM II# |
---|---|---|---|---|---|
FMN | 844 | 831 | 830 | 99.40% | 100% |
Cobalamin | 1713 | 1807 | 1703 | 99.41% | 99.59% |
TPP | 2245 | 2250 | 2242 | 99.95% | 99.95% |
Lysine | 651 | 621 | 618 | 97.45% | 98.25% |
Glycine | 1185 | 1260 | 1174 | 99.66% | 100% |
Purine | 595 | 645 | 594 | 99.83% | 99.83% |
Sam | 1262 | 1278 | 1255 | 99.44% | 99.68% |
Sam alpha | 194 | 233 | 127 | 69.02% | 75.14% |
Glms | 172 | 154 | 153 | 96.83% | 97.45% |
PreQ1 | 332 | 2387 | 267 | 90.94% | 98.84% |