Table 2 Multicore with 8 threads and E-value equal to 10-3
From: PLAST: parallel local alignment search tool for database comparison
| Â | protein vs protein | protein vs DNA | DNA vs protein | ||||||
|---|---|---|---|---|---|---|---|---|---|
query bank | BLASTP | PLASTP | speedup | TBLASTN | TPLASTN | speedup | BLASTX | PLASTX | speedup |
1K | 1530 | 506 | 3.02 | 384 | 117 | 3.28 | 651 | 174 | 3.74 |
3K | 4206 | 898 | 4.46 | 1068 | 186 | 5.74 | 1999 | 451 | 4.43 |
10K | 21450 | 3807 | 5.60 | 3659 | 428 | 8.54 | 6237 | 1418 | 4.39 |