From: PLAST: parallel local alignment search tool for database comparison
 | protein vs protein | protein vs DNA | DNA vs protein | ||||||
---|---|---|---|---|---|---|---|---|---|
query bank | BLASTP | PLASTP | speedup | TBLASTN | TPLASTN | speedup | BLASTX | PLASTX | speedup |
1K | 4836 | 1521 | 3.17 | 1003 | 360 | 2.78 | 2286 | 558 | 4.08 |
3K | 12298 | 2861 | 4.29 | 2881 | 632 | 4.55 | 7010 | 1631 | 4.29 |
10K | 58145 | 14004 | 4.15 | 9480 | 1631 | 5.81 | 21774 | 5002 | 4.35 |