Skip to main content

Table 3 Multicore with 2 threads and E-value equal to 10

From: PLAST: parallel local alignment search tool for database comparison

 

protein vs protein

protein vs DNA

DNA vs protein

query bank

BLASTP

PLASTP

speedup

TBLASTN

TPLASTN

speedup

BLASTX

PLASTX

speedup

1K

4836

1521

3.17

1003

360

2.78

2286

558

4.08

3K

12298

2861

4.29

2881

632

4.55

7010

1631

4.29

10K

58145

14004

4.15

9480

1631

5.81

21774

5002

4.35

  1. Comparison of performance of BLAST and PLAST families running with 2 threads. The E-value cutoff is set to 10 and option "-m8" of BLAST is enabled. BLAST is run in multithread mode (-a 2). Execution times are given in seconds.