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Table 4 Misalignments of PLASTP and BLASTP

From: PLAST: parallel local alignment search tool for database comparison

E-value 10 1 10-1 10-2 10-3
BLASTP total 556570 507225 462673 423919 394887
PLASTP total 537892 497933 464238 422466 394636
Identical 513096 477982 442854 409437 383746
BLASTP include 11227 9135 7586 6181 5259
PLASTP include 3880 2868 2277 1570 1250
BLASTP miss 20916 (3.9%) 17083 (3.4%) 19271 (4.1%) 9640 (2.2%) 10890 (2.7%)
PLASTP miss 32247 (5.9%) 20108 (4.0%) 12232 (2.6%) 8301 (1.9%) 5882 (1.4%)
  1. Misalignments of PLASTP and BLASTP for GB1-NR versus PROT-SCOP-1K for different E-values.