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Table 4 Misalignments of PLASTP and BLASTP

From: PLAST: parallel local alignment search tool for database comparison

E-value

10

1

10-1

10-2

10-3

BLASTP total

556570

507225

462673

423919

394887

PLASTP total

537892

497933

464238

422466

394636

Identical

513096

477982

442854

409437

383746

BLASTP include

11227

9135

7586

6181

5259

PLASTP include

3880

2868

2277

1570

1250

BLASTP miss

20916 (3.9%)

17083 (3.4%)

19271 (4.1%)

9640 (2.2%)

10890 (2.7%)

PLASTP miss

32247 (5.9%)

20108 (4.0%)

12232 (2.6%)

8301 (1.9%)

5882 (1.4%)

  1. Misalignments of PLASTP and BLASTP for GB1-NR versus PROT-SCOP-1K for different E-values.