Table 6 Execution time of the three PLAST programs
From: PLAST: parallel local alignment search tool for database comparison
program | PLASTP | TPLASTN | PLASTX | ||||||
|---|---|---|---|---|---|---|---|---|---|
query bank | 1K | 3K | 10K | 1K | 3K | 10K | 1K | 3K | 10K |
1 thread | 2704 | 5024 | 24374 | 570 | 1053 | 2810 | 1081 | 3090 | 9730 |
2 threads | 1446 | 2602 | 12415 | 319 | 556 | 1416 | 554 | 1591 | 4981 |
4 threads | 847 | 1480 | 7370 | 188 | 310 | 773 | 303 | 842 | 2620 |
8 threads | 506 | 898 | 3807 | 117 | 186 | 428 | 174 | 451 | 1418 |