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Table 6 Execution time of the three PLAST programs

From: PLAST: parallel local alignment search tool for database comparison

program PLASTP TPLASTN PLASTX
query bank 1K 3K 10K 1K 3K 10K 1K 3K 10K
1 thread 2704 5024 24374 570 1053 2810 1081 3090 9730
2 threads 1446 2602 12415 319 556 1416 554 1591 4981
4 threads 847 1480 7370 188 310 773 303 842 2620
8 threads 506 898 3807 117 186 428 174 451 1418
  1. Performance of the three PLAST programs running with multithreading mode. The E-value cutoff is set to 10-3. Execution times are given in seconds.