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Table 7 Percentage of indexing time overall in the three PLAST programs

From: PLAST: parallel local alignment search tool for database comparison

program PLASTP TPLASTN PLASTX
query bank 1K 3K 10K 1K 3K 10K 1K 3K 10K
Indexing time (1 thread) 3.0% 1.6% 0.3% 6.5% 3.5% 1.4% 1.2% 0.4% 0.1%
Indexing time (8 threads) 15.8% 8.9% 2.1% 31.6% 19.9% 8.9% 7.5% 2.9% 1.0%
  1. Percentage of indexing time overall in the three PLAST programs with number of threads equal to 1 and 8.