Table 7 Percentage of indexing time overall in the three PLAST programs
From: PLAST: parallel local alignment search tool for database comparison
program | PLASTP | TPLASTN | PLASTX | ||||||
|---|---|---|---|---|---|---|---|---|---|
query bank | 1K | 3K | 10K | 1K | 3K | 10K | 1K | 3K | 10K |
Indexing time (1 thread) | 3.0% | 1.6% | 0.3% | 6.5% | 3.5% | 1.4% | 1.2% | 0.4% | 0.1% |
Indexing time (8 threads) | 15.8% | 8.9% | 2.1% | 31.6% | 19.9% | 8.9% | 7.5% | 2.9% | 1.0% |