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Table 1 Distributions of pair dependencies according the binding sites similarity clustering.

From: Transcription factor site dependencies in human, mouse and rat genomes

 

Dependent pairs A-B*

Independent pairs A-B*

A&B belong to the same cluster

25

8

A&B belong to the different cluster

444

1063

  1. p-value = 7.692106e-08 (Fisher's exact test)
  2. *transcription factors for which cluster is not assigned [see Additional file 3] are omitted from analysis
  3. The number (percent) of dependent/independent pairs (in all there genomes human+mouse+rat intersection) that belong to the same/different cluster (clustering of transcription factors is performed based on the similarity between their binding sites, see Additional file 3).
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BMC Bioinformatics

ISSN: 1471-2105

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