Table 1 Predictive power of amino acid indices.
From: Exploiting structural and topological information to improve prediction of RNA-protein binding sites
AUC | ID | Description |
|---|---|---|
0.646 | GUOD860101 | Retention coefficient at pH 2 |
0.644 | GUYH850105 | Apparent partition energies calculated from Chothia index |
0.643 | RADA880107 | Energy transfer from out to in |
0.643 | CHOC760103 | Proportion of residues 95% buried |
0.642 | OLSK800101 | Average internal preferences |
0.640 | COWR900101 | Hydrophobicity index, 3.0 pH |
0.639 | JURD980101 | Modified Kyte-Doolittle hydrophobicity scale |
0.639 | ROSM880102 | Side chain hydropathy, corrected for solvation |
0.638 | TANS770106 | Normalized frequency of chain reversal D |
0.637 | GARJ730101 | Partition coefficient |