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Table 3 Species-specific binding parameters for two yeast TFs.

From: BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors

TF

Species

Experiment design

E BP

U BP

Motif similarity score

Median E BP

Median U BP

STE12

Scer

R

-18.1

-15.09

0.82

-18.31

-15.09

  

R

-35.86

-18.16

0.72

  
 

Smik

R

-24.40

-21.11

0.91

-17.35

-17.17

  

R

-17.35

-16.44

0.90

  
  

D

-16.96

-17.17

0.90

  
 

Sbay

R

-16.52

-16.24

0.86

-16.52

-16.24

  

R

-16.47

-15.7

0.86

  
  

D

-21.72

-18.02

0.91

  

TEC1

Scer

R

-15.63

-15.46

0.91

-18.66

-15.96

  

R

-21.68

-16.45

0.92

  
 

Smik

R

-11.82

-12.95

0.90

-14.03

-13.59

  

R

-15.92

-15.88

0.91

  
  

D

-14.03

-13.59

0.90

  
 

Sbay

R

-19.39

-13.43

0.79

-15.46

-13.57

  

R

-14.95

-12.63

0.83

  
  

D

-15.97

-14.50

0.93

  
  1. Minimal binding energy (consensus) E BP and chemical potential U BP are estimated by the BayesPI based on ChIP-chip experimental data from S. cerevisiae (Scer), S. mikatae (Smik), and S. bayanus (Sbay) under pseudohyphal conditions. R represents replicated experiment, and D means dye-swapped experiment.