Skip to main content

Table 4 Comparison of GO annotations for RAST and GRC.

From: The Genome Reverse Compiler: an explorative annotation tool

RAST GO-Based Comparison

ID

TP-Verifiable

Term Confirm.

Term Compat.

Term Incompat.

Avg.Con.Depth

Avg.Com.Depth

RAST W3110

1354

1995

136

123

4.3

5.21

RAST syrDC3000

1225

1701

258

141

4.18

5.37

GRC W3110

2620

12913

271

302

3.84

4.81

GRC syrDC3000

2791

12002

254

253

3.8

4.59

  1. The performance in making GO annotations for RAST and GRC. The number of true positives that have GO terms for the reference and the called gene are TP-verifiable. The number of GO terms found to be confirmed, compatible, and incompatible and the average depth for those terms.