A structure filter for the Eukaryotic Linear Motif Resource

BMC Bioinformatics

Table 1 Frequency of secondary structure elements in true and in random motifs

		loop	3/10 helix	helix	strand
νTM		0.72	0.04	0.18	0.06
ν Random		0.48	0.03	0.33	0.17
νTM/νRandom	q _sse (i)	1.50	1.33	0.55	0.35

The table reports the secondary structure type frequencies observed in motifs of the benchmark and random datasets calculated considering only non-wildcard positions. νTM: frequency in the true motif instance dataset; νRandom: frequency in the random match dataset; q_sse(i) = secondary structure score of position i.

ISSN: 1471-2105