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Table 1 Frequency of secondary structure elements in true and in random motifs

From: A structure filter for the Eukaryotic Linear Motif Resource

   loop 3/10 helix helix strand
νTM   0.72 0.04 0.18 0.06
ν Random   0.48 0.03 0.33 0.17
νTM/νRandom q sse (i) 1.50 1.33 0.55 0.35
  1. The table reports the secondary structure type frequencies observed in motifs of the benchmark and random datasets calculated considering only non-wildcard positions. νTM: frequency in the true motif instance dataset; νRandom: frequency in the random match dataset; q sse (i) = secondary structure score of position i.
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BMC Bioinformatics

ISSN: 1471-2105

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