Skip to main content

Table 1 Taxonomic classification and number of proteins of the fully sequenced species analyzed.

From: Stratification of co-evolving genomic groups using ranked phylogenetic profiles

Species Taxonomy† Taxonomic relatedness to M. genitalium Evaluation of the divergence distance from M. genitalium Number of proteins
Mycoplasma genitalium Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma - 0 480
Ureaplasma parvum Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Ureaplasma Within family 17 611
Streptococcus pyogenes Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus Within phylum 25 1696
Buchnera aphidicola Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera Within superkingdom 31 574
Nanoarchaeum equitans Archaea; Nanoarchaeota; Nanoarchaeum From distinct super kingdoms 59 536
  1. † The taxonomic classification is according to The common path between each and M. genitalium is shown in bold.
  2. ‡ The evaluated divergence distance aims to provide a quantitative assessment of the taxonomic distance. The values are derived from the scores of the pair-wise alignments between the 16S RNA from each species and the 16S RNA from M. genitalium (see Methods). The same divergence order was obtained when distance matrix was retrieved from greengenes - a 16s RNA gene database [38] (divergence distance scores ordered as in the table: 0, 0.14, 0.25, 0.31, 0.63, see Methods).