From: phyloXML: XML for evolutionary biology and comparative genomics
Element/Attribute | Description and Sub-elements |
---|---|
phylogeny | Represents a phylogeny, contains clades. |
clade | Used recursively to represent node of a phylogeny. |
taxonomy | Represents taxonomic information. |
id | |
code | |
scientific_name | |
common_name | |
synonym | |
authority | |
sequence | A gene or protein associated with a clade. |
symbol | |
accession | |
name | |
location | |
mol_seq | |
uri | |
annotation | |
domain_architecture | |
events | Events at a clade. |
type | |
duplications | |
speciations | |
losses | |
confidence | |
annotation | Annotation of sequence. |
desc | |
confidence | |
property | |
uri | |
property | Typed and referenced mixed (free text) content. |
uri | Uniform resource identifier (e.g. a URL). |
confidence | Statistical confidence. |
distribution | Geographic distribution of the items of a clade. |
date | Date associated with a clade. |
sequence_relation | Typed relationship between two sequences. |
clade_relation | Typed relationship between two clades. |
id_ref | Attribute, used together with id_source to describe relations between various elements. |
id_source | Attribute, used together with id_ref to describe relations between various elements. |