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Table 1 Different amino acids and codons in clusters B1, C1 and D1 of P1PR

From: Inferring within-patient HIV-1 evolutionary dynamics under anti-HIV therapy using serial virus samples with vSPA

Position

Cluster

 

B1

C1

D1

10

L(CTC)

I(ATC)

I (ATC)

32

V(GTA)

V(GTG)

V (GTG)

35

E(GAA)

D (GAC)

D (GAC)

37

D(GAT)

D (GAT)

E (GAA)

54

I(ATC)

T (ACC)

T (ACC)

55

R(AGA)

K (AAA)

K (AAA)

62

I(ATA)

I (ATA)

V (GTA)

71

A(GCT)

V (GTT)

V (GTG)

90

M(ATG)

L (TTG)

M (ATG)

95

C(TGC)

C (TGT)

C (TGC)

  1. Identical codons in any two clusters are shown in bold. Identical amino acids at different codon levels are shown in bold italics.