Table 4 Performance measures for bartab:
| Â | Â | Â | Execution Time (sec.)1 | |||
|---|---|---|---|---|---|---|
Sequences Processed | Split Sequences (-spl option) | De-replicate Sequences (-rep option) | System A 2 | System B 3 | System C 4 | System D 5 |
400,000 | - | - | 411 (13) | 65 (0.82) | 145 (8.6) | 40 (0.0) |
400,000 | + | - | 993 (193) | 71 (2.07) | 178 (3.1) | 41 (0.0) |
400,000 | - | + | 434 (5.5) | 76 (0.75) | 151 (0.8) | 47 (1.2) |
400,000 | + | + | 927 (65) | 78 (0.75) | 197 (9.1) | 48 (0.6) |
800,000 | - | - | 900 (4.8) | 133 (0.98) | 289 (14) | 81 (0.0) |
800,000 | + | - | 1909 (225) | 142 (3.9) | 462 (9.0) | 89 (6.8) |
800,000 | - | + | 917 (29) | 148 (2.3) | 299 (1.4) | 97 (2.6) |
800,000 | + | + | 2023 (109) | 154 (1.6) | 465 (0.5) | 106 (10) |
1,600,000 | - | - | 1923 (69) | 265 (2.2) | 573 (11) | 164 (2.0) |
1,600,000 | + | - | 3764 (74) | 285 (4.2) | 1475 (278) | 255 (64) |
1,600,000 | - | + | 1909 (88) | 304 (1.7) | 623 (15) | 197 (7.6) |
1,600,000 | + | + | 4938 (968) | 313 (4.3) | 1482 (129) | 281 (62) |
3,200,000 | - | - | n.d. | 549 (8.4) | 1161 (35) | 415 (34) |
3,200,000 | + | - | n.d. | 587 (13) | 3729 (469) | 566 (156) |
3,200,000 | - | + | n.d. | 622 (3.6) | 1266 (21) | 457 (29) |
3,200,000 | + | + | n.d. | 813 (5.8) | 3494 (231) | 691 (232) |