Table 2 Cellular level. Datasets and ground truth in the benchmark at cellular level.
From: A biosegmentation benchmark for evaluation of bioimage analysis methods
Type | Cat retinal photoreceptors | Arabidopsis and cat retinal 3D cells | Breast cancer cells | COS1 kidney cells |
|---|---|---|---|---|
# images | 29 images | 10 stacks | 58 images | 190 images |
size (pixel) | 512 × 512 (also 768 × 512) | 512 × 521 × 50 up to 1056 × 1056 × 30 | 896 × 768 (also 768 × 512) | 1024 × 1024 |
format | .tiff | .tiff (Flouview),.lsm | .jpg | .tiff |
channels | TOPRO | nuclear and membrane stains | H & E stain | Calcein AM (green-alive) Propidium iodide (red-dead) Hoechst (nuclear stain-blue) |
condition | normal | normal | malignant/benignant | 2, 6, 12, |
species | cat | plant, cat | human | monkey |
ground truth | cell count and centroid | cell centroid | 58 binary masks | 5 binary masks |