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Table 2 Cellular level. Datasets and ground truth in the benchmark at cellular level.

From: A biosegmentation benchmark for evaluation of bioimage analysis methods

Type Cat retinal photoreceptors Arabidopsis and cat retinal 3D cells Breast cancer cells COS1 kidney cells
# images 29 images 10 stacks 58 images 190 images
size (pixel) 512 × 512 (also 768 × 512) 512 × 521 × 50 up to 1056 × 1056 × 30 896 × 768 (also 768 × 512) 1024 × 1024
format .tiff .tiff (Flouview),.lsm .jpg .tiff
channels TOPRO nuclear and membrane stains H & E stain Calcein AM (green-alive) Propidium iodide (red-dead) Hoechst (nuclear stain-blue)
condition normal normal malignant/benignant 2, 6, 12,
species cat plant, cat human monkey
ground truth cell count and centroid cell centroid 58 binary masks 5 binary masks