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Table 6 Number of differentially expressed probes between Nfkb1-/- knockout and wild-type samples at 180 mins at a 5% false discovery rate when probe filtering is applied or not applied

From: Illumina WG-6 BeadChip strips should be normalized separately

Normalization

Without filtering

With filtering

  

Before normalization

After normalization

Array-level

140

159

159

Strip-level

290

312

312