Linguistic feature analysis for protein interaction extraction

BMC Bioinformatics

Table 4 Results

Data set	Exp.	Synt. kernel		Shallow+Synt. kernel		Lex.+Synt. kernel		Shallow+Lex.+Synt. kernel
		F-score	AUC	F-score	AUC	F-score	AUC	F-score	AUC
AIMed	CV	0.33	0.69	0.37	0.66	0.37	0.67	0.39	0.7
	4-1	0.33	0.67	0.35	0.66	0.35	0.68	0.4	0.72
	1-4	0.23	0.64	0.24	0.63	0.22	0.61	0.24	0.67
BioInfer	CV	0.3	0.69	0.29	0.68	0.29	0.75	0.34	0.75
	4-1	0.3	0.69	0.32	0.68	0.25	0.65	0.31	0.7
	1-4	0.31	0.68	0.34	0.67	0.26	0.64	0.35	0.7
HPRD50	CV	0.58	0.69	0.59	0.73	0.44	0.72	0.56	0.73
	4-1	0.48	0.73	0.48	0.72	0.47	0.75	0.56	0.75
	1-4	0.33	0.67	0.31	0.64	0.26	0.63	0.3	0.65
LLL	CV	0.74	0.81	0.74	0.76	0.67	0.67	0.76	0.73
	4-1	0.43	0.68	0.44	0.71	0.31	0.6	0.39	0.74
	1-4	0.37	0.67	0.34	0.63	0.3	0.55	0.33	0.62
IEPA	CV	0.76	0.81	0.71	0.8	0.66	0.7	0.72	0.8
	4-1	0.35	0.69	0.32	0.64	0.19	0.56	0.29	0.68
	1-4	0.36	0.66	0.33	0.63	0.3	0.55	0.33	0.62

ISSN: 1471-2105