Skip to main content

Table 2 Prediction accuracies achieved for each functional site prediction method.

From: SitesIdentify: a protein functional site prediction tool

Method Absolute Recall Rate Relative Recall Rate Average Distance between Predicted and Real Centroid (Å)
SitesIdentify    
   Uniform charge method 47.6% 63.0% 11.2
   Conservation method 56.9% 74.7% 9.4
Consurf 58.6% 78.2% 8.2
Crescendo 46.9% 63.8% 10.3
FOD 39.7% 56.1% 10.6
QSiteFinder 40.1% 53.0% 13.0
PDBSiteScan 28.1% 38.4% 15.5
PASS 36.6% 49.3% 14.8
Thematics 35.8% 48.9% 13.5
  1. The absolute and relative recall rates achieved along with the average distance between real and active site centroids for each method.