SitesIdentify: a protein functional site prediction tool

BMC Bioinformatics

Table 2 Prediction accuracies achieved for each functional site prediction method.

Method	Absolute Recall Rate	Relative Recall Rate	Average Distance between Predicted and Real Centroid (Å)
SitesIdentify
Uniform charge method	47.6%	63.0%	11.2
Conservation method	56.9%	74.7%	9.4
Consurf	58.6%	78.2%	8.2
Crescendo	46.9%	63.8%	10.3
FOD	39.7%	56.1%	10.6
QSiteFinder	40.1%	53.0%	13.0
PDBSiteScan	28.1%	38.4%	15.5
PASS	36.6%	49.3%	14.8
Thematics	35.8%	48.9%	13.5

The absolute and relative recall rates achieved along with the average distance between real and active site centroids for each method.

ISSN: 1471-2105