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Table 1 Classification of the reporters.

From: An experimental loop design for the detection of constitutional chromosomal aberrations by array CGH

Classification

Log Ratio patient1/patient3

Log Ratio Patient2/patient1

Duplication for patient1

positive

negative

Duplication for patient2

0

positive

Duplication for patient3

negative

0

Deletion for patient1

negative

positive

Deletion for patient2

0

negative

Deletion for patient3

positive

0

  1. Each reporter is classified as duplicated (positive), deleted (negative), or not changed in copy-number (0) for two chosen contrasts, i.e. Patient 1 versus 3 and Patient 2 versus 1. Based on the results of both contrasts a reporter can be recognized as duplicated or deleted for Patient 1, 2, or 3, according to this scheme.
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BMC Bioinformatics

ISSN: 1471-2105

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