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Table 3 Performance of HM-SVM trained on modified training sets

From: Prediction of protein binding sites in protein structures using hidden Markov support vector machine

Data set

Specificity+

Sensitivity+

F1

Accuracy

MCC

AUC

Hetero-complex I

43.8%

58.3%

49.5%

66.7%

26.5%

69.1%

Homo-complex I

44.9%

58.4%

49.9%

68.4%

29.0%

71.9%

Mix I

42.8%

62.0%

49.6%

65.7%

27.2%

70.5%

Hetero-complex II

53.7%

56.1%

54.2%

67.4%

29.4%

70.3%

Homo-complex II

53.7%

55.4%

53.0%

69.0%

31.3%

72.4%

Mix II

54.5%

54.9%

54.5%

69.6%

31.8%

72.0%