Table 2 Summary of methods and abbreviations.
From: Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods
Abbrev. | Methodology | Statistic |
|---|---|---|
DPCP | Presence-absence profiling using Dollo parsimony compressed profiles. | Hypergeometric p-value |
WRUNS | Presence-absence profiling using Weighted hypergeometric and runs test | Weighted hypergeometric score |
GSHGTPars | Parsimony reconstructed ancestral group sizes | Hypergeometric p-value |
GSCORPars | Parsimony reconstructed ancestral group sizes | Kendall-Ï„ p-value |
GSHGTGeneT | Gene-tree reconstructed ancestral group sizes | Hypergeometric p-value |
GSCORGeneT | Gene-tree reconstructed ancestral group sizes | Kendall-Ï„ p-value |