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Table 3 Sensitivity of co-evolution detection methods on OrthoMCL profile pairs.

From: Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods

Positive pair set Presence/absence profiling Group size profiling
  DPCP WRUNS GSHGT Pars GSCOR Pars GSHGT GeneT GSCOR GeneT
Unweighted negative control (TNUW)
TPCoPW 20.7% 14.9% 6.4% 12.2% 17.3% 18.6%
TPPPI 17.5% 13.7% 17.2% 25.9% 33.7% 37.9%
Weighted negative control (TNW)
TPCoPW 16.3% 14.3% 6.4% 12.5% 13.8% 10.5%
TPPPI 15.1% 13.3% 17.2% 25.9% 29.0% 27.2%