Table 3 Sensitivity of co-evolution detection methods on OrthoMCL profile pairs.
From: Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods
Positive pair set | Presence/absence profiling | Group size profiling | ||||
|---|---|---|---|---|---|---|
| Â | DPCP | WRUNS | GSHGT Pars | GSCOR Pars | GSHGT GeneT | GSCOR GeneT |
Unweighted negative control (TNUW) | ||||||
TPCoPW | 20.7% | 14.9% | 6.4% | 12.2% | 17.3% | 18.6% |
TPPPI | 17.5% | 13.7% | 17.2% | 25.9% | 33.7% | 37.9% |
Weighted negative control (TNW) | ||||||
TPCoPW | 16.3% | 14.3% | 6.4% | 12.5% | 13.8% | 10.5% |
TPPPI | 15.1% | 13.3% | 17.2% | 25.9% | 29.0% | 27.2% |