Table 4 Sensitivity of co-evolution detection methods on InterPro profile pairs
From: Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods
Positive pair set | Presence/absence profiling | Group size profiling | ||||
|---|---|---|---|---|---|---|
| Â | DPCP | WRUNS | GSHGT Pars | GSCOR Pars | GSHGT GeneT | GSCOR GeneT |
Unweighted negative control (TNUW) | ||||||
TPCoPW | 11.0% | 9.8% | 13.1% | 18.7% | 18.8% | 31.9% |
TPPPI | 3.1% | 3.3% | 27.5% | 34.4% | 39.7% | 63.7% |
Weighted negative control (TNW) | ||||||
TPCoPW | 12.0% | 11.9% | 9.2% | 13.9% | 11.7% | 14.4% |
TPPPI | 3.5% | 3.9% | 21.6% | 26.5% | 29.2% | 42.4% |