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Table 2 Different sets of matrix wm

From: DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices

Different sets of matrix wm

Set A

1000 sequences (500 test + 500 training) and 2 × 500 background sequences

1000 nucleotides

60% GC

Set B

1000 sequences (500 test + 500 training) and 2 × 500 background sequences

2000 nucleotides

60% GC

Set C

400 sequences (200 test + 200 training) and 2 × 200 background sequences

1000 nucleotides

50% GC

Set D

400 sequences (200 test + 200 training) and 2 × 200 background sequences

10000 nucleotides

60% GC

Set E

400 sequences (200 test + 200 training) and 2 × 200 background sequences

10000 nucleotides

50% GC