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Table 2 Preprocessing overview

From: A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability

method package function log2 σ reference
RMA affy Expresso yes yes [55]
mgMOS puma justmgMOS yes yes [56]
mmgMOS puma justmmgMOS yes yes [57]
dChip affy expresso no yes [58]
MAS5.0 affy expresso no no [59]
Rosetta - - - - [11]
  1. The column package indicates which R package was used to obtain the expression values, while the column function provides the name of the function used from the package. Column log2 indicates if the expression estimates as returned by the function are already on log2 scale or not. The column σ indicates if the function directly computes uncertainty information or not.