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Table 2 Preprocessing overview

From: A comprehensive sensitivity analysis of microarray breast cancer classification under feature variability

method

package

function

log2

σ

reference

RMA

affy

Expresso

yes

yes

[55]

mgMOS

puma

justmgMOS

yes

yes

[56]

mmgMOS

puma

justmmgMOS

yes

yes

[57]

dChip

affy

expresso

no

yes

[58]

MAS5.0

affy

expresso

no

no

[59]

Rosetta

-

-

-

-

[11]

  1. The column package indicates which R package was used to obtain the expression values, while the column function provides the name of the function used from the package. Column log2 indicates if the expression estimates as returned by the function are already on log2 scale or not. The column σ indicates if the function directly computes uncertainty information or not.