Mapping of Blattabacteria short ESTs onto a moderate related genome template. In the example, JANE maps a high fraction of ESTs to moderately related genomes (at least 80% rRNA identity/60% household enzyme similarity) with about 80% accuracy. The number in the left scale indicates the location in the genome template (in kilobases). All mapped ESTs are listed. Arrows in different colours (right) mark the consensus regions of mapping, i.e., red indicates the forward strand and green the reverse strand. A statistical report analyzes the mapping result (right corner). The inserts at the bottom show that by clicking on an individual EST detailed analysis is possible, the different HSPs used and their position appear. This includes also a list of all HSPs available as well as the chosen best EST match generated by JANE. Further analysis regarding all ESTs of that region, contig prediction, coding sequence and function prediction is also provided (see text). More details on the program options and an actual screen shot are given in Fig. S1.