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Figure 3 | BMC Bioinformatics

Figure 3

From: Derivation of an amino acid similarity matrix for peptide:MHC binding and its application as a Bayesian prior

Figure 3

Comparisons of amino acid similarity profiles of PMBEC and BLOSUM62. Each amino acid profile of 20 elements was normalized to a length of 1.0 with zero mean to allow direct comparison between the two matrices. Serine-specific amino acid similarity profiles of the two matrices share a high correlation. Glutamic Acid-specific ones, however, significantly differ for the substitutions involving charged residues: (Glutamic Acid (E) -> Lysine (K)) and (Glutamic Acid (E) -> Arginine (R)).

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